TOMATOMET
Advanced use via APIs
TOMATOMET provides a set of APIs (Application Programming Interfaces) by which other programs can use the repository data directly. By accessing the URLs written in specified formats, users can get the results in JSON format (text). The APIs facilitate users integration the search functions in other programs and performing a large amount of searches.
Terminology
Alignment
We compiled the peak detection results from 25 tomato varieties into an "alignment" *****
Functions
Displaying the results on a browser
Getting the results in JSON format
Displaying the results on a browser
Displaying details of an alignment
| Format | /alignment/ID |
|---|---|
| Variable |
ID: The alignment ID |
| Example | /alignment/KTP_025411 |
| Description | The details of the specified alignment are displayed on the web browser. |
Displaying alignment search results
| Format | /search/MASS/MASS_TOLERANCE |
|---|---|
| Variable |
MASS: m/z value MASS_TOLERANCE: m/z tolerance in ppm |
| Example | /search/1034.5534/5 |
| Description | The alignments searched based on the averaged m/z value are displayed on the web browser. |
Getting the results in JSON format
Getting a list of alignment
| Format | /api/list/tomato |
|---|---|
| Example | /api/list/tomato |
| Description | All alignment data are available in JSON format. |
Getting details of an alignment
| Format | /api/alignment/ID |
|---|---|
| Variable |
ID: The alignment ID |
| Example | /api/alignment/KTP_025411 |
| Description | Detailed information of the specified alignment ID is available in JSON format. |
Searching alignments based on the average m/z values
| Format | /api/search/MASS/MASS_TOLERANCE |
|---|---|
| Variable |
MASS: m/z value MASS_TOLERANCE: m/z tolerance in ppm |
| Example | /api/search/1034.5534/5 |
| Description | Alignments are searched based on the averaged m/z value, and the results are obtained in JSON format. |