Download List

MassChroBook

Two-dimensional mass chromatogram images for all samples are available as Microsoft PowerPoint files.

MassChroBook (12 Mar 2020)

PowerGetBatch parameters

A set of parameter files for PowerGetBatch tool which was used for peak detection and alignment. The PowerGetBatch tool is available from the link page shown below.

PowerGetBatch parameter files

Previous data

The previous versions of the published data are available below. We archive the repository data irregularly when we overwrite the published data. This ensures the reproducibility of the data analysis performed with this repository.
Please note that we do not change the peak file set and the mass chromatogram data (.raw and .mzXML) available in the “LC-MS data” below.

	manual_previousData_en.pdf（301 KB） The user guide for use of the previous data.
	archive_PlantMR_200405.zip（43 MB） Published: 2020/04/05, Archived: 2022/04/18
	archive_PlantMR_220418.zip（38 MB） Published: 2022/04/18, Archived: 2022/04/18

Retention time converter

This MS Excel file provides the retention time conversion between ThingMR and FoodMR/PlantMR. This is for your information, too, when you convert the retention time between XMRs and your own LC-MS system.
Note: The results are just approximated values and are not accurate.

LC-MS data

The list of detected peaks, raw mass chromatogram data (ThermoFisher .raw), and the mass chromatogram data converted to mzXML format are available for each sample. The mzXML files and the peak list files can be analyzed using MassChroViewer tool which is available below.

No.	Category	Name	Image
	Apiaceae; leaf	Parsley, leaf
	Apiaceae; root	Parsley, root
	Asteraceae; leaf	Leaf lettuce green
	Poaceae; seed	Rice, Koshihikari, brown rice
	Poaceae; seed	Rice, Nipponbare, brown rice
	Poaceae; leaf	Rice, Koshihikari, leaf
	Poaceae; leaf	Rice, Nipponbare, leaf
	Brassicaceae; leaf	Arabidopsis, shoot
	Amaryllidaceae; leaf	Japanese bunching onion (Jakkou), leaf
	Amaryllidaceae; root	Japanese bunching onion (Jakkou), root
	Brassicaceae; root	Little radish, Comet, root
	Brassicaceae; leaf	Little radish, Comet, leaf
	Solanaceae; fruit	Tomato, Micro-Tom, peel at red stage
	Solanaceae; fruit	Tomato, Micro-Tom, flesh at red stage
	Solanaceae; flower	Tomato, Micro-Tom, flower
	Solanaceae; cell culture	Tobacco, BY-2 cell, 3 days
	Solanaceae; cell culture	Tobacco, BY-2 cell, 7 days
	medium	Tobacco, culture medium, 0 days
	medium	Tobacco, culture medium, 3 days
	medium	Tobacco, culture medium, 7 days
	Ginkgoaceae; leaf	Ginkgo biloba, leaf
	Selaginellaceae; leaf	Selaginella moellendorffii
	Funariaceae	Physcomitrella patens, protonema
	Funariaceae	Physcomitrella patens, gametophore
	Marchantiaceae	Marchantia polymorpha, Takaragaike_1
	medium	Marchantia polymorpha, culture medium
	Fabaceae	Lotus japonicus
	Salicaceae	Populus nigra, sheedling, shoot

MassChroViewer tool

The mzXML data and the peak list data available above can be opened by the MassChroViewer software. Detailed information, such as exact peak position, raw MSn data for each scan can be seen, and further annotation looking at the chemical structures of candidate compounds can be performed with the tool. MassChroViewer is available free of charge for academic purposes.